Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs28578269 chr1:248528438 A/G 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs28591111 chr1:248526951 A/G 4.4E-5 514 22.15 22.67 13.43 KM Plot
HNSC rs28602650 chr1:248525650 C/T 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs28635846 chr1:248526812 C/A 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs28698997 chr1:248525780 C/T 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs28705095 chr1:248528818 A/G 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs28718027 chr1:248525657 G/A 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs28745279 chr2:100018271 G/A 3.36E-5 515 22.42 20.77 9.6 KM Plot
HNSC rs28824296 chr4:140354616 A/C 7.47E-6 494 20 26.87 18.2 KM Plot
HNSC rs2955782 chr15:31135591 G/A 1.05E-5 512 22.83 20.03 12.07 KM Plot
HNSC rs3044453 chr4:140333076 C/CTT 1.73E-5 499 20.63 27.82 18.2 KM Plot
HNSC rs3087399 chr2:100055158 T/C 2.94E-6 515 22.42 20.15 7.17 KM Plot
HNSC rs3213989 chr12:42863801 G/A 1.66E-5 509 21.93 22.5 17.52 KM Plot
HNSC rs336541 chr3:161056698 A/C 4.82E-5 511 24.68 24.07 17.75 KM Plot
HNSC rs336548 chr3:161058412 T/C 4.82E-5 511 24.68 24.07 17.75 KM Plot